Guilherme Bauer Negrini

Guilherme Bauer Negrini

Biomedical Scientist | Software Developer

Biography

I am a PhD student in Biochemistry and an undergraduate student in Biomedical Informatics. My interests are mostly related to biological and health sciences, including data analysis, data visualization, bioinformatics and biomedical software.

Currently, I am a member of the Group for Translational Studies on Autism Spectrum Disorder (GETTEA). My research projects involve RNA-Seq data analysis and usability evaluation of bioinformatics tools.

Interests
  • Data Science
  • Bioinformatics
  • Neuroscience
  • Software Engineering
  • Human-Computer Interaction
Education
  • PhD in Biochemistry, 2018 - 2022

    Universidade Federal do Rio Grande do Sul (UFRGS)

  • BSc in Biomedical Informatics, 2018 - 2022

    Universidade Federal do Ciências da Saúde de Porto Alegre (UFCSPA)

  • Continued Education Course in Higher Education Teaching, 2018 - 2019

    Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)

  • MSc in Neuroscience, 2016 - 2018

    Universidade Federal do Rio Grande do Sul (UFRGS)

  • BSc in Biomedical Sciences, 2012 - 2016

    Universidade Federal do Rio Grande do Sul (UFRGS)

Skills

Python

Advanced

R

Intermediate

Tableau

Novice

Vue.js

Intermediate

Statistics

Intermediate

git

Intermediate

Docker

Novice

Google Cloud

Novice

Experience

 
 
 
 
 
Researcher
Universidade Federal do Rio Grande do Sul (UFRGS)
Jul 2013 – Present Brazil

Basic research and analysis of biological data in animal models of neurodevelopmental disorders

Responsibilities include:

  • Study design and statistical analysis
  • Animal behavior testing and analysis
  • Creation and execution of bioinformatics pipelines
  • Mentoring undergraduate students

Courses and training

Agile in the context of public service
Introduction to Transcriptome Analysis of RNA-seq Data
Descriptive Statistics using SPSS v.18
Scientific Divulgation

GitHub Projects

HL7® FHIR® server using Cloud Healthcare API

HL7® FHIR® server using Cloud Healthcare API

Creation of an HL7® FHIR® server using cloud computing resources from the Google Cloud Platform (Portuguese-BR)

Automated miRDB custom target search

Automated miRDB custom target search

Command-line tool to automate the search for microRNA targets in the miRDB base and extract the number of binding sites

Hebbie Ann

Hebbie Ann

Chatbot for interaction on topics in Artificial Neural Networks (Portuguese-BR)

PMdataX - PubMed data eXtraction

PMdataX - PubMed data eXtraction

A command-line tool to fetch data from articles available on PubMed

Speech-to-Text pipeline

Speech-to-Text pipeline

A personal use pipeline integrating Google Cloud services to transcribe audio files

Word2Vec on ASD papers

Word2Vec on ASD papers

Word2Vec word embedding analysis on Autism Spectrum Disorder (ASD) articles abstracts available on PubMed

Scientific Publications